skbio.sequence.GrammaredSequence.__contains__¶
- GrammaredSequence.__contains__(subsequence)[source]¶
Determine if a subsequence is contained in this sequence.
State: Stable as of 0.4.0.
- Parameters:
subsequence (str, Sequence, or 1D np.ndarray (np.uint8 or '|S1')) – The putative subsequence.
- Returns:
Indicates whether subsequence is contained in this sequence.
- Return type:
- Raises:
TypeError – If subsequence is a
Sequence
object with a different type than this sequence.
Examples
>>> from skbio import Sequence >>> s = Sequence('GGUCGUGAAGGA') >>> 'GGU' in s True >>> 'CCC' in s False